[Molecularmechanics] Recommendations for object oriented approaches / UML models

[Jens Jorgen Mortensen]

Konrad Hinsen wrote:
> If you are new to OO techniques, you might want to start by looking  at 
> existing OO approaches to molecular simulation. The ones I am  aware of 
> are (in alphabetical order):
> 
> - Adun: http://diana.imim.es/Adun
> - mmLib: http://pymmlib.sourceforge.net/
> - NAMD: http://www.ks.uiuc.edu/Research/namd/
> - OOMPAA: http://mccammon.ucsd.edu/~oompaa/
> - OOPSE: http://oopse.org/
> 
> and my very own one:
> 
> - MMTK: http://dirac.cnrs-orleans.fr/MMTK/

Another Python framework:

- ASE: http://wiki.fysik.dtu.dk/ase

-- 
Jens Jørgen